Package globaltest

Detailed Description

Title:Testing Association of a Group of Genes with a Clinical Variable Description:Testing whether a group of genes (e.g. a pathway) is significantly associated with a clinical variable of interest.

Author:Jelle Goeman <j.j.goeman@lumc.nl> and Jan Oosting <j.oosting@lumc.nl> Maintainer:Jelle Goeman <j.j.goeman@lumc.nl> Version:3.2.0 Built:R 2.2.1; ; 2006-02-11 19:00:45; unix Date:2005-09-19 Depends:R (>= 2.0.0), methods License:GPL version 2 or newer Packaged:Sun Oct 16 21:35:06 2005; biocbuild Suggests:Biobase, survival, vsn, golubEsets, KEGG, hu6800 URL:www.math.leidenuniv.nl/~jgoeman/

checkerboard
Checkerboard plot for Global Test
lastPlot.jpeg

Last ouput from checkerboard(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: globaltest/checkerboard/example.log
geneplot
Gene Plot for Global Test
lastPlot.jpeg

Last ouput from geneplot(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: globaltest/geneplot/example.log
permutations
Permutations version of the Global Test
lastPlot.jpeg

Last ouput from permutations(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: globaltest/permutations/example.log
regressionplot
Regression Plot for Global Test
lastPlot.jpeg

Last ouput from regressionplot(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: globaltest/regressionplot/example.log
sampleplot
Sample Plot for Global Test
lastPlot.jpeg

Last ouput from sampleplot(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: globaltest/sampleplot/example.log

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