Package marray

Detailed Description

Title:Exploratory analysis for two-color spotted microarray data Description:Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author:Yee Hwa (Jean) Yang <jeany@maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit. Maintainer:Yee Hwa (Jean) Yang <jean@biostat.ucsf.edu> Version:1.8.0 Built:R 2.2.1; ; 2006-03-04 19:52:40; unix Date:2005-09-18 Depends:R (>= 1.9.0), limma, methods License:LGPL Packaged:Sun Oct 16 22:11:14 2005; biocbuild URL:http://www.maths.usyd.edu.au/u/jeany/

maDotsDefaults
Replace graphical default parameters by user supplied parameters
lastPlot.jpeg

Last ouput from maDotsDefaults(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maDotsDefaults/example.log
maDotsMatch
Replace default arguments of a function by user supplied values
lastPlot.jpeg

Last ouput from maDotsMatch(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maDotsMatch/example.log
maImage
Color image for cDNA microarray spot statistics
lastPlot.jpeg

Last ouput from maImage(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maImage/example.log
maNormMain
Main function for location and scale normalization of cDNA microarray data
lastPlot.jpeg

Last ouput from maNormMain(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maNormMain/example.log
maPalette
Microarray color palette
lastPlot.jpeg

Last ouput from maPalette(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maPalette/example.log
maPlot
Scatter-plots for cDNA microarray spot statistics
lastPlot.jpeg

Last ouput from maPlot(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/maPlot/example.log
plot.marrayRaw
Scatter-plots for cDNA microarray spot statistics
lastPlot.jpeg

Last ouput from plot.marrayRaw(). For all plots see PDF file.

PDF output with all plots
Example code and log output is in the "Files" section, please see: marray/plot.marrayRaw/example.log

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